PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g034000.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 267aa    MW: 30575.7 Da    PI: 8.1121
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g034000.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.84.7e-09134181455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Sopim03g034000.0.1 134 SHSLAERARREKISKKMKCLQDLVPGC----NKVIGKAGMLDEIINYVQSLQ 181
                         8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.52E-6128185No hitNo description
SuperFamilySSF474591.7E-15128193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.958130180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-16130191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6134181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-9136186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MSILERQRAI FEHLYQCQQQ QQTSNSLPNQ NLAQLNSLMS ENTMEFSQFQ NFPFKIDTQI  60
DFGSEKRNWT SKKRKSEVYE EYECKVERLD GEAGEVKTEM IVKTEKGKNS KENLEAKNTD  120
FIHVRARRGQ ATDSHSLAER ARREKISKKM KCLQDLVPGC NKVIGKAGML DEIINYVQSL  180
QKQVEFLSIK LATSNVNTDN LFAKELPNPT FLQQQGNINI GVTQRRENCL MSFPEAVLDS  240
SNVLALQQLP NLETDLQCLF GVRFQK*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755151e-174HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004234555.10.0PREDICTED: transcription factor BEE 2
SwissprotQ93VJ45e-44BEE2_ARATH; Transcription factor BEE 2
TrEMBLK4BFS20.0K4BFS2_SOLLC; Uncharacterized protein
STRINGSolyc03g034000.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40002142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36540.12e-44BR enhanced expression 2